Sequence tools
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Formats conversions
- SQUIZZ
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Display
- EMBOSS
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Features
- EMBOSS
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- extractfeat:
Extract features from a sequence.
- maskfeat:
Mask off features of a sequence.
- showfeat:
Show features of a sequence.
- twofeat:
Finds neighbouring pairs of features in sequences.
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Sequence edition
- EMBOSS
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- biosed: Replace or delete sequence sections.
- cutseq: Removes a specified section from a sequence.
- extractseq: Extract regions from a sequence.
- degapseq: Removes gap characters from sequences.
- descseq: Alter the name or description of a sequence.
- extractfeat: Extract features from a sequence.
- makenucseq: Creates random nucleotide sequences
- makeprotseq: Creates random protein sequences
- maskfeat: Mask off features of a sequence.
- maskseq: Mask off regions of a sequence.
- newseq: Type in a short new sequence.
- pasteseq: Insert one sequence into another.
- revseq: Reverse and complement a sequence
- seqret: Reads and writes (returns) sequences
- showfeat: Show features of a sequence.
- skipseq: Reads and writes (returns) sequences, skipping first few
- twofeat:Finds neighbouring pairs of features in sequences
- trimest: Trim poly-A tails off EST sequences.
- trimseq: Trim ambiguous bits off the ends of sequences.
- vectorstrip: Strips out DNA between a pair of vector sequences.
- yank: Reads a sequence range, appends the full USA to a list file
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Sequences manipulation
- EMBOSS
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- entret: Reads and writes (returns) flatfile entries
- listor:
Writes a list file of the logical OR of two sets of sequences.
- notseq:
Excludes a set of sequences and writes out the remaining ones.
- nthseq:
Writes one sequence from a multiple set of sequences.
- seqretsplit: Reads and writes (returns) sequences in individual files
- splitter:
Split a sequence into (overlapping) smaller sequences.
- skipseq:
Reads and writes (returns) sequences, skipping the first few.
- union:
Reads sequence fragments and builds one sequence.
![[francais]](/icons/flag-fr.gif)
Last update: october, 10 2006
bioweb@pasteur.fr