| description | The CONSENSUS programs are a collection of programs for determining and analyzing DNA and protein patterns describing functional elements. |
| version | |
| homepage | http://gzhertz.home.comcast.net/~gzhertz/ |
| commands | consensus fasta-consensus genbank-consensus gmat-inf-gc make-matrix p-value patser rand-seqs seq-modifier wconsensus con-filter |
| manpages | consensus gmat-inf-gc make-matrix p-value patser rand-seqs wconsensus |
| documentation | |
| interfaces | consensus |
| description | Compute synonymous sequences that maximize protein evolutionary landscape exploration. |
| version | 1.0 |
| homepage | |
| commands | elp |
| manpages | |
| documentation | |
| interfaces | elp |
| description | Intelligent searching of the PRINTS motif database |
| version | 3.596 |
| homepage | http://www.bioinf.manchester.ac.uk/fingerPRINTScan/ |
| commands | fingerPRINTScan |
| manpages | |
| documentation | |
| interfaces |
| description | Signature Recognition Search Against the Integrated Resource of Protein Domains and Functional Sites |
| version | 4.6 |
| homepage | http://www.ebi.ac.uk/Tools/InterProScan |
| commands | iprscan ResubmitJobs.pl |
| manpages | iprscan ResubmitJobs.pl |
| documentation | |
| interfaces |
| description | predicts the subcellular location of eukaryotic proteins. |
| version | 1.0 |
| homepage | http://www.cbs.dtu.dk/services/NetNGlyc/ |
| commands | netNglyc |
| manpages | netNglyc |
| documentation | |
| interfaces |
| description | predicts the subcellular location of eukaryotic proteins. |
| version | 1.0 |
| homepage | http://www.cbs.dtu.dk/services/NetNGlyc/ |
| commands | netNglyc |
| manpages | netNglyc |
| documentation | |
| interfaces |
| description | predicts the subcellular location of eukaryotic proteins. |
| version | 3.1 |
| homepage | http://www.cbs.dtu.dk/services/NetOGlyc/ |
| commands | netOglyc |
| manpages | netOglyc |
| documentation | |
| interfaces |
| description | The pftools package contains programs for generalized profile applications. |
| version | 2.3 |
| homepage | |
| commands | gtop pfmake pfscan pfw ptoh htop pfscale pfsearch psa2msa 2ft 6ft ptof |
| manpages | 2ft 6ft gtop htop pfmake pfscale pfscan pfsearch pfw psa psa2msa ptof ptoh xpsa psa xpsa |
| documentation | |
| interfaces | pftools |
| description | Pattern discovery tool. |
| version | 2.1 |
| homepage | http://www.ii.uib.no/~inge/Pratt.html |
| commands | pratt |
| manpages | pratt |
| documentation | |
| interfaces | pratt |
| description | Search for Prosite patterns in protein sequences. |
| version | 0.02a |
| homepage | |
| commands | prose prose+ |
| manpages | prose prose+ |
| documentation | |
| interfaces | prose |
| description | Search for patterns in DNA and protein sequences. |
| version | 97 |
| homepage | |
| commands | scan_for_matches show_hits |
| manpages | scan_for_matches |
| documentation | |
| interfaces | scan_for_matches |
| description | Multiple Prosite motifs searching. |
| version | 1.0 |
| homepage | |
| commands | sig |
| manpages | sig |
| documentation | |
| interfaces | sig |
| description | predict signal peptides in proteins |
| version | 3.0 |
| homepage | http://www.cbs.dtu.dk/services/SignalP/ |
| commands | signalp |
| manpages | signalp |
| documentation | |
| interfaces |
| description | SMILE is a tool that infers motifs in a set of sequences, according to some criterias. |
| version | 1.47 |
| homepage | http://www-igm.univ-mlv.fr/~marsan/smile_english.html |
| commands | smile |
| manpages | smile |
| documentation | |
| interfaces | smile |
| description | tacg is a command-line program that performs many of the common routines in pattern matching in biological strings. |
| version | 4.1.0 |
| homepage | http://tacg.sourceforge.net/ |
| commands | tacg |
| manpages | tacg |
| documentation | |
| interfaces | tacg |