| description | Ktreedist calculate the minimum branch length distance (or K tree score) from one phylogenetic tree to another. The K tree score provides a measure of the difference in both topology and branch lengths between two trees after scaling one of them to have a global divergence as similar as possible to the other tree. |
| version | 1 |
| homepage | http://molevol.cmima.csic.es/castresana/Ktreedist.html |
| commands | ktreedist |
| manpages | |
| documentation |
http://bioweb2.pasteur.fr/docs/ktreedist/ |
| interfaces | ktreedist |
| description | PHYLIP is a package of programs for inferring phylogenies. |
| version | 3.67 |
| homepage | http://evolution.gs.washington.edu/phylip.html |
| commands | clique consense contml contrast dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dolmove dollop dolpenny factor fitch gendist kitsch mix move neighbor pars penny proml promlk protdist protpars restdist restml retree seqboot treedist drawgram drawtree |
| manpages | |
| documentation |
http://bioweb2.pasteur.fr/docs/phylip/ |
| interfaces | clique consense dnadist dnapars drawgram drawtree fitch kitsch mix neighbor pars protdist protpars unroot |
| description | Report bootstrap values found with consensus program (after bootstrap analysis) on related tree found with phylogeny algorithm without bootstrap analysis. |
| version | 1.00 |
| homepage | |
| commands | rbvotree |
| manpages | rbvotree |
| documentation | |
| interfaces | rbvotree |
| description | A program to estimate the rate of molecular evolution and time-scale of a phylogeny from dated sequences. |
| version | 1.2 |
| homepage | http://evolve.zoo.ox.ac.uk/software.html?id=tipdate |
| commands | tipdate |
| manpages | tipdate |
| documentation |
http://bioweb2.pasteur.fr/docs/tipdate/TipDate.v1.2.Manual.pdf |
| interfaces | tipdate |