| description | LVB uses parsimony to reconstruct phylogeny from a nucleotide alignment, using a simulated annealing heuristic search. |
| version | 2.3 |
| homepage | http://biology.st-andrews.ac.uk/cegg/lvb.htm |
| commands | lvb |
| manpages | |
| documentation |
http://biology.st-andrews.ac.uk/cegg/lvb.htm |
| interfaces | lvb |
| description | Software package for inference of evolutionary trees. |
| version | 4b10 |
| homepage | http://paup.csit.fsu.edu/ |
| commands | paup |
| manpages | |
| documentation | |
| interfaces |
| description | PHYLIP is a package of programs for inferring phylogenies. |
| version | 3.67 |
| homepage | http://evolution.gs.washington.edu/phylip.html |
| commands | clique consense contml contrast dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dolmove dollop dolpenny factor fitch gendist kitsch mix move neighbor pars penny proml promlk protdist protpars restdist restml retree seqboot treedist drawgram drawtree |
| manpages | |
| documentation |
http://bioweb2.pasteur.fr/docs/phylip/ |
| interfaces | clique consense dnadist dnapars drawgram drawtree fitch kitsch mix neighbor pars protdist protpars unroot |
| description | Aligns and finds the phylogeny at the same time for a set of homologous proteins or DNA/RNA sequences. |
| version | |
| homepage | |
| commands | treealign |
| manpages | treealign |
| documentation | |
| interfaces | treealign |