| description | CONSEL calculates the p-value using several testing procedures; the bootstrap probability, the Kishino-Hasegawa test, the Shimodaira-Hasegawa test, and the weighted Shimodaira-Hasegawa test. In addition to these conventional tests, CONSEL calculates the p-value based on the approximately unbiased test using the multi-scale bootstrap technique. |
| version | v0.1k |
| homepage | http://www.is.titech.ac.jp/~shimo/prog/consel/ |
| commands | makermt catpv catci catrep treeass consel randrep catmt seqmt makerep catass |
| manpages | : |
| documentation | |
| interfaces | weighbor |
| description | The Newick Utilities are a suite of Unix shell tools for processing phylogenetic trees. Functions include re-rooting, extracting subtrees, trimming, pruning, condensing, drawing (ASCII graphics or SVG). |
| version | 1.6 |
| homepage | http://cegg.unige.ch/newick_utils |
| commands | nw_indent, nw_display, nw_clade, nw_reroot, nw_rename, nw_condense, nw_support, nw_ed, nw_topology, nw_distance, nw_labels, nw_prune, nw_order, nw_match, nw_gen, nw_trim, nw_duration, nw_stats |
| manpages | |
| documentation | |
| interfaces |
| description | PHYLIP is a package of programs for inferring phylogenies. |
| version | 3.67 |
| homepage | http://evolution.gs.washington.edu/phylip.html |
| commands | clique consense contml contrast dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dolmove dollop dolpenny factor fitch gendist kitsch mix move neighbor pars penny proml promlk protdist protpars restdist restml retree seqboot treedist drawgram drawtree |
| manpages | |
| documentation |
http://bioweb2.pasteur.fr/docs/phylip/ |
| interfaces | clique consense dnadist dnapars drawgram drawtree fitch kitsch mix neighbor pars protdist protpars unroot |