| description | BIONJ is a distance based phylogeny reconstruction algorithm, which is well suited for distances estimated from DNA or protein sequences. |
| version | |
| homepage | http://www.lirmm.fr/~w3ifa/MAAS/BIONJ/ |
| commands | bionj |
| manpages | |
| documentation | |
| interfaces | bionj |
| description | Computer Program Package for Molecular Phylogenetics. |
| version | 2.3b2 |
| homepage | http://www.ism.ac.jp/ismlib/softother.e.html#molphy |
| commands | protml protst nucml nucst njdist totalml |
| manpages | |
| documentation | |
| interfaces |
| description | PHYLIP is a package of programs for inferring phylogenies. |
| version | 3.67 |
| homepage | http://evolution.gs.washington.edu/phylip.html |
| commands | clique consense contml contrast dnacomp dnadist dnainvar dnaml dnamlk dnamove dnapars dnapenny dolmove dollop dolpenny factor fitch gendist kitsch mix move neighbor pars penny proml promlk protdist protpars restdist restml retree seqboot treedist drawgram drawtree |
| manpages | |
| documentation |
http://bioweb2.pasteur.fr/docs/phylip/ |
| interfaces | clique consense dnadist dnapars drawgram drawtree fitch kitsch mix neighbor pars protdist protpars unroot |
| description | QuickTree is a program for the rapid reconstruction of phylogenies by the Neighbor-Joining method. |
| version | 1.1 |
| homepage | http://www.sanger.ac.uk/Software/analysis/quicktree/ |
| commands | quicktree |
| manpages | quicktree |
| documentation | |
| interfaces | quicktree |
| description | Aligns and finds the phylogeny at the same time for a set of homologous proteins or DNA/RNA sequences. |
| version | |
| homepage | |
| commands | treealign |
| manpages | treealign |
| documentation | |
| interfaces | treealign |
| description | Weighted Neighbor Joining. |
| version | 1.2.1 |
| homepage | http://www.t10.lanl.gov/billb/weighbor/ |
| commands | weighbor |
| manpages | weighbor |
| documentation | |
| interfaces | weighbor |