Biological Software: Miscelanous unclassified software.



apt
description Affymetrix Power Tools (APT) are a set of cross-platform command line programs that implement algorithms for analyzing and working with Affymetrix GeneChip® arrays.
version 1.12.0
homepage http://www.affymetrix.com/partners_programs/programs/developer/tools/powertools.affx
commands apt-canary apt-cdf-export apt-cdf-to-spf apt-cel-convert apt-cel-extract apt-cel-transformer apt-check-calvinchp apt-check-cel apt-check-chp apt-check-matrix apt-check-mixedfile apt-check-textfile apt-chp-to-txt apt-convert-spf apt-copynumber-analysis apt-copynumber-cyto apt-copynumber-log2ratio apt-copynumber-reference apt-copynumber-workflow apt-data-subset apt-dmet-copynumber apt-dmet-genotype apt-dmet-translation apt-dump-pgf apt-engine-wrapper apt-file5-util apt-geno-qc apt-mas5 apt-matrix-diff apt-midas apt-probeset-genotype apt-probeset-summarize apt-snp-compare apt-summary-genotype apt-summary-vis apt-tsv-join
manpages
documentation
interfaces

BclConverter
description Illumina BCL Converter software
version 1.7.1
homepage
commands bclToQseq configureBclToQseq.py setupBclToQseq.py moveConfigXml.py statsToSignalMeans BclSignal_Means.pl BclplotIntensity_tiles.pl BclplotIntensity_for_IVC.pl Bclcreate_IVC_thumbnail.pl Bclcreate_tile_thumbnails.pl BclproduceIntensityStats.pl
manpages
documentation
interfaces

mothur
description Modular sofwate system for microbial ecology studies
version 1.18
homepage http://www.mothur.org/
commands mothur
manpages
documentation
interfaces

OLB
description Solexa Off-Line Basecaller Software
version 1.6
homepage
commands QualityApply QualityCalibration Signal_Means.pl allCifToTxt.py analyseImage analyseImages bclToQseq bustard.py callBases cifToTxt configureBclToQseq.py convertQuality create_IVC_thumbnail.pl create_tile_thumbnails.pl estimateCrosstalk estimatePhasing fwhm2params.py moveConfigXml.py parse_cluster_stats.py parse_offset_scaling.py phasing_summary.py plotIntensity_for_IVC.pl plotIntensity_tiles.pl produceAlignStats produceIntensityStats.pl produceQualityValueStats qseqToBcl select_cluster_size.py select_matrices.py select_phasing.py setupBclToQseq.py statsToSignalMeans summarise_matrices.py update_distance.py update_offsets.py
manpages
documentation
interfaces

relpair
description RELPAIR is a program that infers the relationships of pairs of individuals based on genetic marker data, either within families or across an entire sample.
version 2.0.1
homepage http://csg.sph.umich.edu/boehnke/relpair.php
commands relpair
manpages relpair
documentation
interfaces


Last update: February, 9 2012