| description | Allegro is a complete linkage analysis package. Its features include parametric and non-parametric LOD score calculations and various features intended for genetic mapping. |
| version | 2.0 |
| homepage | http://www.decode.com/software |
| commands | allegro |
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| description | EAGLET (Efficient Analysis of Genetic Linkage: Testing and Estimation) is a fast, flexible, and powerful program for finding disesae-related genes in the human genome. |
| version | 1.3 |
| homepage | http://www.columbia.edu/~ws2267/SOFT/EAGLET/eaglet.html |
| commands | eaglet |
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| description | Multipoint analysis of pedigree data including: non-parametric linkage analysis, LOD-score computation, information-content mapping, haplotype reconstruction |
| version | 1.3 |
| homepage | http://www.broadinstitute.org/ftp/distribution/software/genehunter/ |
| commands | gh xgh |
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| description | CNV detection from Illumina whole-genome SNP genotyping arrays. It has been extended to handle candidate gene SNP arrays, to handle recent high-density arrays with non-polymorphic markers (so-called CN markers), and to handle Affymetrix genome-wide arrays. |
| version | 2009.08.27 |
| homepage | http://www.openbioinformatics.org/penncnv/ |
| commands | compare_cnv.pl detect_cnv.pl genomic_wave.pl kcolumn.pl split_illumina_report.pl convert_cnv.pl filter_cnv.pl infer_snp_allele.pl scan_region.pl visualize_cnv.pl |
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| interfaces | detect_cnv scan_region |
| description | QuantiSNP identifies putative copy number alterations from Illumina Infinium I/II SNP genotyping data. |
| version | v2.3 beta |
| homepage | http://groups.google.co.uk/group/quantisnp/web/software-updates |
| commands | quantisnp |
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